PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0210900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 301aa MW: 34151.7 Da PI: 5.6443

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0210900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.2e-56	21	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee+v++yL++k++++++++ vi++v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+ ORGLA07G0210900.1 21 LPPGFRFHPTDEEVVTHYLTRKAQDRSFSC-VVIADVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYWKATGKDKEI 111 79************************99.78***********99999*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g lvg+kktLvfy grap+gekt Wvmheyrl ORGLA07G0210900.1 112 FRGRGLLVGMKKTLVFYMGRAPRGEKTPWVMHEYRL 147 9*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-63	18	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.856	21	171	IPR003441	NAC domain
Pfam	PF02365	4.5E-29	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSESEVSVIN QLEEEETRLE LPPGFRFHPT DEEVVTHYLT RKAQDRSFSC VVIADVNLNN 60 CEPWDLPSKA KMGEKEWFFF CHKDRKYPTG MRTNRATASG YWKATGKDKE IFRGRGLLVG 120 MKKTLVFYMG RAPRGEKTPW VMHEYRLDGK LPPNLPRSAK EEWAVCRVFN KDLAAKIAQM 180 PPPPFPRNDS FDLDLDDFLH LDADLPPLID DPFASTSTLK TEPPPPANLM HNHYGYFSLP 240 ASATNYNHSS GAMADQAIRR FCKAEASMAC FSGADADVDP VVDELLSFPD SITDYSYIWK 300 A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	17	176	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	17	176	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	17	176	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	17	176	13	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	17	176	16	173	NAC domain-containing protein 19
3swm_B	1e-54	17	176	16	173	NAC domain-containing protein 19
3swm_C	1e-54	17	176	16	173	NAC domain-containing protein 19
3swm_D	1e-54	17	176	16	173	NAC domain-containing protein 19
3swp_A	1e-54	17	176	16	173	NAC domain-containing protein 19
3swp_B	1e-54	17	176	16	173	NAC domain-containing protein 19
3swp_C	1e-54	17	176	16	173	NAC domain-containing protein 19
3swp_D	1e-54	17	176	16	173	NAC domain-containing protein 19
4dul_A	1e-54	17	176	13	170	NAC domain-containing protein 19
4dul_B	1e-54	17	176	13	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0210900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073876	0.0	AK073876.1 Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence.
GenBank	AK105645	0.0	AK105645.1 Oryza sativa Japonica Group cDNA clone:001-200-F06, full insert sequence.
GenBank	CT841573	0.0	CT841573.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105A13, full insert sequence.
GenBank	CU405564	0.0	CU405564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F22, full insert sequence.
GenBank	JN185444	0.0	JN185444.1 Oryza sativa Japonica Group NAC transcription factor 15 (NAC15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647863.1	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	1e-86	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	I1QDB7	0.0	I1QDB7_ORYGL; Uncharacterized protein
STRING	ORGLA07G0210900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	2e-83	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]