PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA07G0179200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 540aa MW: 59741.5 Da PI: 4.5529 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.8e-14 | 34 | 78 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd+ l ++++G+++W+ Ia+ + +t+ qc+ rw++yl ORGLA07G0179200.1 34 SWSAEEDDVLRTQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 78 6****************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.6 | 2.8e-13 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd+ll +a k lG++ W+ Ia+ + gRt++ +k+r+ + ORGLA07G0179200.1 84 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 127 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.809 | 27 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-13 | 31 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.55E-26 | 31 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.75E-13 | 34 | 78 | No hit | No description |
Pfam | PF13921 | 5.8E-15 | 35 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 35 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.367 | 83 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-19 | 86 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-9 | 87 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MATGPDLTPP AAAAAASAEA PSASAAKKDR HIVSWSAEED DVLRTQIALH GTDNWTIIAA 60 QFKDKTARQC RRRWYNYLNS ECKKGGWSRE EDLLLCEAQK VLGNKWTEIA KVVSGRTDNA 120 VKNRFSTLCK RRAKDDELFK ENGSLCSSAS AKRALAQTEC LTSGASGSAP PIKQMRPCNS 180 DFKENMTPNM RLVGQDKSTQ DSRQPLAIVY QNNQDNMNTM DTQNLVAKTA AKQLFAGEHD 240 CVKHEGNFLN KDDPKIVTLL QRADLLCSLA TKINTENTSQ SMDEAWQQLQ HHLDKKDDND 300 MSESSMSGMA SLLEDLDDLI VDPYENEEEE DQNLREQNEQ IDMENKQNSS QTSMEVTSQM 360 VPDNKMEDCP NDKSTEDNNM EPCPGEDIPT SENLTEAAIE DSLLQCVEYS SPVHTVIQAK 420 TDAEIAASEN LSEVLEHNRL QCIKLASPAQ TTTPVEANAE TPASEKLSEV VKCKNPPRMG 480 FTSPAHTVPT FLPYADDMPT PKFTASERNF LLSVLELTSP GSRPDTSQQP SCKRALLNSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 35 | 132 | 10 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA07G0179200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063426 | 0.0 | AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647542.1 | 0.0 | transcription factor MYB124 isoform X2 | ||||
TrEMBL | I1QCF0 | 0.0 | I1QCF0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0179200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 1e-82 | MYB family protein |