PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0162200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 421aa    MW: 44442.3 Da    PI: 7.2125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0162200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.6e-0692112323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C  Cgk Fs++ +L  H+r+H
  ORGLA07G0162200.1  92 CRECGKLFSSWRSLFGHMRRH 112
                        ********************9 PP
2zf-C2H214.40.00011292314123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+Cp Cgk+F +   L  H  +H
  ORGLA07G0162200.1 292 YECPGCGKVFASYQALGGHRASH 314
                        99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.111335IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-51335IPR007087Zinc finger, C2H2
SuperFamilySSF576676.54E-101335No hitNo description
Gene3DG3DSA:3.30.160.601.2E-41336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4081335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576676.54E-1085112No hitNo description
SMARTSM003550.01490112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1890113IPR007087Zinc finger, C2H2
PfamPF139129.4E-591112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-492112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576678.95E-5289316No hitNo description
PfamPF139122.3E-11291316IPR007087Zinc finger, C2H2
SMARTSM003550.05292314IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45292319IPR007087Zinc finger, C2H2
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDAGGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAAELGANGG VVGYGLRENP  60
KKTRRLSEFD GDGDGEEVEV EEGGDGGELR ACRECGKLFS SWRSLFGHMR RHASGGGGRN  120
HDDDDDDDVD VEDEFGGGEE EEIVAPAPAA VTVIAAPPRR RRRSMRVAAP APAPPRPVLL  180
GGFEKEQEDV ALGLLMLSRD TGVWRSPVKA ETFEKPEQKK KKATAKQPPP LPLPRNGYGY  240
GYNSDEDSAL LQYGGDVAKS RKRRASYHSP NSISSKKKQQ PRAAAPAKRT RYECPGCGKV  300
FASYQALGGH RASHKRINTS CSAPKVSPAT AAAAAPAPEP SSETYASLST LSPSASPGSA  360
AAGIGDRKAN NKSSAEEEKF GGACSSDELY AELELEQRSP AAAAGFLDLN FPPASSEVGV  420
N
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0162200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361330.0CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.10.0uncharacterized protein LOC107278250
TrEMBLA0A0E0QAT80.0A0A0E0QAT8_ORYRU; Uncharacterized protein
TrEMBLA0A0P0X8650.0A0A0P0X865_ORYSJ; Os07g0598800 protein
TrEMBLI1QBY00.0I1QBY0_ORYGL; Uncharacterized protein
STRINGORUFI07G22100.10.0(Oryza rufipogon)
STRINGOS07T0598800-000.0(Oryza sativa)
STRINGORGLA07G0162200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-12C2H2-like zinc finger protein