PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0083600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 607aa    MW: 64366.5 Da    PI: 3.7757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0083600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.82.9e-25111461128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG+rF+Ptd elv+++L ++++gk+l+l+ vi e+d ++v Pw+L ++ +++ +e +fF++++ k+ +g+r++r +   g W+ +     
  ORGLA07G0083600.1  11 LPPGLRFDPTDGELVSRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAE-HGRGDEGFFFAEARAKNGKGSRQKRtVEGGGLWQGQRVcad 101
                        79****************************99***************744.4567799******************4455899*96654222 PP

                NAM  89 dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++l+        + e v+ k  L f+ ++ ++g ++ Wvmhey++
  ORGLA07G0083600.1 102 GEKLLVPdgggggvEVEIVWRKYLLSFF-AEGERG-SSGWVMHEYAV 146
                        2233333566655444459999999999.444554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-318165IPR003441NAC domain
PROSITE profilePS5100529.22911165IPR003441NAC domain
PfamPF023659.7E-1512145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAAGGGGADG LPPGLRFDPT DGELVSRFLL RRLQGKPLPL NGVILEADPL SVPPWKLLAE  60
HGRGDEGFFF AEARAKNGKG SRQKRTVEGG GLWQGQRVCA DGEKLLVPDG GGGGVEVEIV  120
WRKYLLSFFA EGERGSSGWV MHEYAVTSPA ELAASPIRLY RVRFSGHGKK RKREPQSGED  180
GVGRARAAPQ SAGTETALLE ERVMPPQPAP QSVGTEDALV EERIPPPQPV PIPPIAGTED  240
ALDVGTEDVR GRAAPQSAGT ESALLEECVL PPQTAPQITG TGVALLDEVV PPPQTVSISP  300
PAALVDAVDD ADCANQGCSG VMDDSTMVFS HLPDMITLPA EEGDAAGGAA LASMDYSWAD  360
FEFPEINMDE LPSCIDFTTT DPSCLDIELS MGDLHEPQST GIESDLLEEF VPQPQPVLVP  420
PLAALVEVAD SSEGPDQGCS VVMHDSSAVF TPLSDPIVLP EEEEADRPDA PAGTMSLDYQ  480
NYSLSDFEFP EYPLLDVAGD ADGADQCSSN VMDDSSMVFS HLEDLITLPA EEAEADACSA  540
APAPSLDNQK YSSQGIIDSE APALSDFEFP ETIDEVLNSI NFTMADPSCL DMEFSMDDLL  600
DFDLPAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-121114415138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0083600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051720.0AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01.
GenBankAP0058800.0AP005880.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1Q9P40.0I1Q9P4_ORYGL; Uncharacterized protein
STRINGORGLA07G0083600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-10NAC domain containing protein 86