PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0045100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 403aa    MW: 44190.4 Da    PI: 4.9686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0045100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-14125223199
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F++ +r
  ORGLA07G0045100.1 125 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLQGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMR-RR 211
                        899********************888**9986666676..999************..*******************************5.34 PP

                        SEE..EEEEE-S CS
                 B3  88 sefelvvkvfrk 99 
                        +++el+v+v+r+
  ORGLA07G0045100.1 212 DDGELYVGVRRQ 223
                        9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-13119234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-13120229IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-11123222No hitNo description
PROSITE profilePS508638.966125224IPR003340B3 DNA binding domain
PfamPF023621.1E-10125223IPR003340B3 DNA binding domain
SMARTSM010190.0012125224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAALPPPPLA DDGDGIVDRA MWLACAAPNS GRLPAVGSVV FYFVDGHAAQ FCQFPVPLLE  60
QLAVPGPRVF LCTVAGVRLR ADALTNEAYA DITLDPVADN DVPHLAPAPA PAPAAAAGGQ  120
QFRYFVKTLM ISDFDFRIRF SAPMADAKGV FPPLVDAKAV QPLLVKDLQG SPMTFDYGRK  180
GKRVTLAKVW KKFRDDMDFV DGDSVIFMRR RDDGELYVGV RRQRTLERPL RNTMRRSRSP  240
TPPQAAVQEA VLAAAGQAAA GERFRVAYRS RQDGDEFVVP REAVDEGLRA RLTSLAEVEF  300
VWAVEDGAPP IVGPRGKVTA ITTGQLWRNL EIVWDGNSEM DMSANFWQVR PVEEVDISPS  360
TPPKRLKNCE IDDTASSSVS VDNGDEQVPT MRQRLEALFP DNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-271933521336Auxin response factor 1
4ldy_B1e-271933521336Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0045100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLI1Q8K90.0I1Q8K9_ORYGL; Uncharacterized protein
STRINGORGLA07G0045100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-27auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]