PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0020700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 344aa    MW: 37993.4 Da    PI: 4.9174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0020700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.16.2e-48321632128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+  +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d+++
  ORGLA07G0020700.1  32 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPI 122
                        69***************************.89*************96345556789************************************ PP

                NAM  93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+     +g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  ORGLA07G0020700.1 123 CSAaaaaaGGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163
                        **9777766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.32131198IPR003441NAC domain
SuperFamilySSF1019412.22E-5231198IPR003441NAC domain
PfamPF023658.0E-2533163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKRGCEDELG AGDVILRGVE EVEEEEDDDL VLPGFRFHPT DEELVTFYLR RKIAGKRLSI  60
EIIKEMDIYK HDPSDFLKTS TVGSEKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDR  120
PICSAAAAAA GGDCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPPPSSA DDLAAGRSSP  180
PPSLQEAEVW TICRIFQRNI THKKQPQPQL AVAAAAVPAP VPDATSSITG SLESDSAGDD  240
VVEYMNTLQP PPASNVNGGY SNQHYFQEQW NSSSNDNTTV FHQHAAPPPE PSPATAMAGF  300
GHDQSVLSSP APSDFYYKDG CNDDIYRMVM ELADPSLFYD HIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-443320419171NO APICAL MERISTEM PROTEIN
1ut4_B7e-443320419171NO APICAL MERISTEM PROTEIN
1ut7_A7e-443320419171NO APICAL MERISTEM PROTEIN
1ut7_B7e-443320419171NO APICAL MERISTEM PROTEIN
3swm_A8e-443320422174NAC domain-containing protein 19
3swm_B8e-443320422174NAC domain-containing protein 19
3swm_C8e-443320422174NAC domain-containing protein 19
3swm_D8e-443320422174NAC domain-containing protein 19
3swp_A8e-443320422174NAC domain-containing protein 19
3swp_B8e-443320422174NAC domain-containing protein 19
3swp_C8e-443320422174NAC domain-containing protein 19
3swp_D8e-443320422174NAC domain-containing protein 19
4dul_A7e-443320419171NAC domain-containing protein 19
4dul_B7e-443320419171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0020700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646514.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLI1Q7W50.0I1Q7W5_ORYGL; Uncharacterized protein
STRINGORGLA07G0020700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-74NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]