PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0006800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 286aa    MW: 30163.8 Da    PI: 6.5049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0006800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33124181259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  ORGLA07G0006800.1 124 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHSHH 181
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-34108182IPR003657WRKY domain
SuperFamilySSF1182907.06E-29115181IPR003657WRKY domain
PROSITE profilePS5081130.079118183IPR003657WRKY domain
SMARTSM007743.4E-39123182IPR003657WRKY domain
PfamPF031065.7E-27124181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAMAGAGDWP FAADEAYADS SAIFAELGWA NGLAVVDAVG ELLPPLDPPG ELATPPPPPL  60
DLPETPAGSS ADGAASSCST DDADGGKPAA AFTEAASKSL TPGKKRARQP RFAFMTKSEI  120
DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSDDPSVV ITTYEGQHSH  180
HTVTFPRAAG FSHIHAMAAL AAAPFSAHQQ LYSNLQPPPP TMPLAATTPA SSSSLLQLPL  240
HCNHELQVVA SCGGYPSSSS SPPASVLPVD KGLLDDMVPR AMRHDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26113180774Probable WRKY transcription factor 4
2lex_A1e-26113180774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0006800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409580.0AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418580.0AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645717.11e-174probable WRKY transcription factor 57
TrEMBLI1Q7H60.0I1Q7H6_ORYGL; Uncharacterized protein
STRINGORGLA07G0006800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.27e-52WRKY DNA-binding protein 57