PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0001500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 285aa    MW: 30914.6 Da    PI: 6.7849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0001500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156183123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  ORGLA07G0001500.1 61 YTCSFCRREFRSAQALGGHMNVH 83
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-65888No hitNo description
PfamPF139121.8E-56184IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2196188IPR007087Zinc finger, C2H2
SMARTSM003550.00616183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDAAAMERMA KHYWALWGAG VRSGWPAAAH GGGAEPSWEE KAFAQDAAGH LGGCVWPPRS  60
YTCSFCRREF RSAQALGGHM NVHRRDRARL RQCDDDDDDP IPPTVSICAP PPPPPPPLLP  120
AAAAAPDSPS PPSLLLQISS PKSTTADHHQ NHQQLQLQGT NSSPNSCIAT IIKESRNKAR  180
LFITTMPAPA PATTHDLGLG GGKDDDDSIS ISMEEIRRKR RRVDQPLTPT PSYSSERERR  240
REDDPAAADA SNNKVIPSSS ILVNQLAMDM VGRQEIDLEL RLGST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135683229superman protein
2l1o_A2e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221RKRRR
2218222KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0001500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645557.11e-156zinc finger protein 10
TrEMBLA0A0D3GL910.0A0A0D3GL91_9ORYZ; Uncharacterized protein
TrEMBLI1Q7C30.0I1Q7C3_ORYGL; Uncharacterized protein
STRINGORGLA07G0001500.10.0(Oryza glaberrima)
STRINGOBART07G00140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-22C2H2 family protein