PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0243200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 640aa    MW: 73580 Da    PI: 6.2718
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0243200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07425465346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  ORGLA06G0243200.1 425 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 465
                        8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2349420IPR001005SANT/Myb domain
PROSITE profilePS500903.95352418IPR017877Myb-like domain
SuperFamilySSF466897.19E-7398472IPR009057Homeodomain-like
SMARTSM007170.51422469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6424472IPR009057Homeodomain-like
PROSITE profilePS500906.806425467IPR017877Myb-like domain
PfamPF139211.3E-5426469No hitNo description
SMARTSM0071721487553IPR001005SANT/Myb domain
PROSITE profilePS500906.574488551IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5490570IPR009057Homeodomain-like
SuperFamilySSF466891.64E-6531608IPR009057Homeodomain-like
PROSITE profilePS500907.898553606IPR017877Myb-like domain
SMARTSM0071719557608IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
GRRGSGTAQQ EGEGEAPGGE GXIGQSRRWR GSEAGFGYRF PKXXQGEGCN GRXGGERNAQ  60
EEEEEGEGEG EGPRKGEEEQ GHCRXHRGGL CRGGAGXSFR TEGGAALLGA CSGXYEQMRL  120
GGRQEYXERX XVDDEEEEEE REKSGDGXRG ADTCWFYXXK CRLVACGDGQ GXKGTGXEVQ  180
EEQTEAXGWX ACGRWICRXX NHDQQRXEEE KKGAICXAER GXSSXHIXEG SEDKGKQEEK  240
KXKRXVXSXL KHXCTHWRRX GWWRWQKXXE KKEERYIDXK EXGWXGXXEX XEKKESKEGN  300
GGRKGEKEKA AQSKDKVRRV SFSDAVEVFS INDGEDEDNG KSAESEVVHG KRFTPEENAT  360
LMEAIMSYIE MKQLGENGLE MIRACSKHPE LKGCWAEIGK SLPHRPLTAI YKRARILLYR  420
SDERKWTPEE YEKIRRHVEK NGTSWISLAQ ELGKSEIHLK DTWRRIKPKN LKSVARFCIS  480
IKWKDSLQSQ WTQDEYQNLF DLVNLDLRVK AHQEYDAGNR KLRDNIAWEA ISDKLTTRNH  540
KNCCLKWYYQ LASPLVQKGI WADTDDYRLV EALQNVDAVC VEDIDWDNLL DHRSGEVCRQ  600
RWNEMVRYLG GHKEKPFIEQ VEVLSKRYCP EMVDYREGEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0243200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLI1Q5L90.0I1Q5L9_ORYGL; Uncharacterized protein
STRINGORGLA06G0243200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.17e-92MYB_related family protein