PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0204400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 240aa    MW: 26900.9 Da    PI: 8.4855
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0204400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.59.8e-311871255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  ORGLA06G0204400.1 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-291472IPR009057Homeodomain-like
PROSITE profilePS5129412.8861474IPR017930Myb domain
TIGRFAMsTIGR015571.9E-241871IPR006447Myb domain, plants
SuperFamilySSF466897.44E-171871IPR009057Homeodomain-like
PfamPF002496.1E-91970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGGFERRGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS  60
HIKSHLQMYR SGSSNSNHPV SLQKLTSATV NNISKREFVN SEDRCIYASG DRNTASSDKN  120
TYTILRCGRS SMPSIEEIFR NWEQTRGRLL PWNSNVITTE QATTRASRQT TNYSKPLKQL  180
TDCDLTLSIG QLWDDAAGSD ADGSSTISEE VAAPSRDEAF VSSADDHFAA PPPRRRRAIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0204400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4067630.0CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641452.11e-170probable transcription factor KAN3
TrEMBLI1Q4I11e-179I1Q4I1_ORYGL; Uncharacterized protein
STRINGORGLA06G0204400.11e-180(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-28G2-like family protein