PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0196600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 426aa    MW: 44291.9 Da    PI: 9.1299
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0196600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.14e-41180256177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++sg++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  ORGLA06G0196600.1 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 256
                        6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-35173242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.547178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-38179257IPR004333Transcription factor, SBP-box
PfamPF031104.2E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AAAAAQRAGM LQHHHHHMYD  60
GLDFAAAMQF GGGQDPPPHP QLLALPPSMA APPPPPMPMP LQMPMTMPMP GDVYPALGIV  120
KREGGGGGQD AAAGRIGLNL GRRTYFSPGD MLAVDRLLMR SRLGGVFGLG FGGAHHQPPR  180
CQAEGCKADL SGAKHYHRRH KVCEYHAKAS VVAASGKQQR FCQQCSRFHV LTEFDEAKRS  240
CRKRLAEHNR RRRKPAAAAT TAVAAAKDAA AAPVAAGKKP SGGAATSYTG DNKNVVSMSA  300
AKSPISSNTS VISCLAEQGK HAAAAARPTA LTLGGAPPHE SSAPQIGAML HHHHHHQQDH  360
MQVSSLVHIN GGGGGGSNNI LSCSSVCSSA LPSTATNGEV SDQNNDNSHN NGGNNNNMHL  420
FEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-301812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0196600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057600.0AP005760.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1047G05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642406.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT90.0SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE80.0SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLI1Q4A30.0I1Q4A3_ORYGL; Uncharacterized protein
STRINGORGLA06G0196600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-45squamosa promoter binding protein-like 8