PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0180700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 390aa    MW: 43257.8 Da    PI: 9.6685
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0180700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-11241171395
                        TT-EE--HHH.HTT............---.....--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3  13 sgrlvlpkkfaeeh............ggkke...esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                        ++rl++p +fa++             +   e   +   + +  + g++W+v+l+  +++ +    +l++GW+e + a+gL eg  vv++l++
  ORGLA06G0180700.1  24 LHRLSVPGEFAARLddddaagvgeeeE---EsgrRAAAVLVVGPLGKVWRVELR--RSPAGdgeAWLGGGWSELAAAHGLGEGWGVVLRLER 110
                        589********9999999999865542...1444677899999**********5..54444447*************************998 PP

                        SSEE..EEE CS
                 B3  87 rsefelvvk 95 
                        r  +   ++
  ORGLA06G0180700.1 111 RGVA--SLR 117
                        7666..444 PP
2B336.11.2e-11145234397
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        k l ++d      + +p kf+++   +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++ +++g++ f  
  ORGLA06G0180700.1 145 KLLQQEDL---EKMKIPEKFVQQQltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLVRYEGNMVF-- 229
                        55533333...3478******8889944445667899999**********..999999****************************9999.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v vf
  ORGLA06G0180700.1 230 TVEVF 234
                        66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1310122IPR015300DNA-binding pseudobarrel domain
CDDcd100176.82E-1012112No hitNo description
SuperFamilySSF1019361.96E-1112124IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.4E-614122IPR003340B3 DNA binding domain
PfamPF023628.6E-925114IPR003340B3 DNA binding domain
PROSITE profilePS508639.51626122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-17138239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17139243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589140237IPR003340B3 DNA binding domain
CDDcd100174.61E-12141234No hitNo description
SMARTSM010198.2E-4143237IPR003340B3 DNA binding domain
PfamPF023622.0E-8152234IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-10314390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-8315390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.698348390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE ESGRRAAAVL  60
VVGPLGKVWR VELRRSPAGD GEAWLGGGWS ELAAAHGLGE GWGVVLRLER RGVASLRVFD  120
PGFCLARFCT PHAGMRTKDR PRFIKLLQQE DLEKMKIPEK FVQQQLTETY TNNHQNAIIV  180
CPLGKFWRVE LQREQPDVLL RDGWAPFLAA HDLSEGNILL VRYEGNMVFT VEVFLQNGCL  240
KEYKTAALYL TDGTEGPSNA PQQSAAKVGV SPVKWKRTRR IEGTCLEGPN RKSRASPISV  300
KVEQHKKHVS IVSQNSFTKE MTAYSIHSLL SVRGTFCSQI GLLEACAITL KISMKKKGSW  360
RVAFKTANTY GYINGPGWRK FCLENEVKEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0180700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047921e-178AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149621e-178AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642658.10.0putative B3 domain-containing protein Os06g0632500 isoform X1
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLI1Q3U40.0I1Q3U4_ORYGL; Uncharacterized protein
STRINGORGLA06G0180700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-11B3 family protein