PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0171400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 329aa MW: 36001.9 Da PI: 5.6327

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0171400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.2e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt +LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl ORGLA06G0171400.1 47 RQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.367	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-32	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.16E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-26	48	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MYEPKPFSSI VLAHNDPVSH NQQIERINNN VVSNSGGNSS NSNFAARQRL RWTDDLHDRF 60 VDAVTQLGGP DRATPKGILR IMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSDKKDL 120 GDLLADIESS SGMEIGEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGRYL QKIIEEQQRL 180 SGVLGESGKL GALGPAPGEP YQDSNKTDPS TPVPTSESPI RDKAGSGLFK TISSHDDCRE 240 PLTPDSSCRA GSPLESPPRA SKRIRVSSDI DHRGNNEFPP PLKVPEPSSG SDFRQESSVL 300 LSSSAVHFDS LESLDADENV FTNGSGSDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-24	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0171400.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071731	0.0	AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644024.1	0.0	myb family transcription factor PHL7
Refseq	XP_015644025.1	0.0	myb family transcription factor PHL7
Refseq	XP_025881863.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-98	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	C0JA19	0.0	C0JA19_ORYGL; MYB-CC type transfactor
TrEMBL	Q69V46	0.0	Q69V46_ORYSJ; Os06g0609500 protein
STRING	OS06T0609500-01	0.0	(Oryza sativa)
STRING	ORGLA06G0171400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-83	G2-like family protein

Publications ? help Back to Top
Lu F, et al. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(6): p. 2071-6 [PMID:19164767]