PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0124600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 39186.2 Da PI: 8.8051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.5 | 3.6e-55 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL +kv + +++ ++i+e+d++k+ePw+Lp+k+k +ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ ORGLA06G0124600.1 23 LPPGFRFHPTDEELITYYLLRKVVDGSFNG-RAIAEIDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREI 113 79*************************999.89***************99999*************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +g+lvg+kktLvfy+grapkg+kt+Wvmheyrl ORGLA06G0124600.1 114 RSArTGALVGMKKTLVFYRGRAPKGQKTQWVMHEYRL 150 *9868889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 22 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.819 | 23 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-28 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MERCSVLGLG GGGGGGGRLD GELPPGFRFH PTDEELITYY LLRKVVDGSF NGRAIAEIDL 60 NKCEPWELPE KAKMGEKEWY FYSLRDRKYP TGLRTNRATG AGYWKATGKD REIRSARTGA 120 LVGMKKTLVF YRGRAPKGQK TQWVMHEYRL DGTYAYHFLS SSTRDEWVIA RIFTKPGVFP 180 VVRKGRLGIS GGGGDTSCFS DSTSASVGGG GGTSASSALR APLAEASLFA AAAAPAVDGA 240 DSSNYGGGGG GGSATATANL VTGLELVPCF STTAHMDASF GTGQYNPAPL AVEPPPPPPA 300 FFPSLRSLQE NLQLPLFLSG GMQAGVSLQP LSGGGAFHWQ SGMDVKVEGA VGRAPPQMAV 360 GPGQLDGAFA WGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 23 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 23 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 23 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 23 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-53 | 23 | 175 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 23 | 175 | 17 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0124600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642575.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | O04017 | 8e-94 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | I1Q283 | 0.0 | I1Q283_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0124600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-88 | NAC family protein |