PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0110900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 711aa    MW: 80720 Da    PI: 9.4477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0110900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07426466346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  ORGLA06G0110900.1 426 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 466
                        8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2350421IPR001005SANT/Myb domain
PROSITE profilePS500903.95353419IPR017877Myb-like domain
SuperFamilySSF466896.94E-7399473IPR009057Homeodomain-like
SMARTSM007170.51423470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6425473IPR009057Homeodomain-like
PROSITE profilePS500906.806426468IPR017877Myb-like domain
PfamPF139214.7E-6427470No hitNo description
SMARTSM0071710558624IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-6560641IPR009057Homeodomain-like
PROSITE profilePS500906.702560622IPR017877Myb-like domain
SuperFamilySSF466891.88E-6602679IPR009057Homeodomain-like
PROSITE profilePS500907.898624677IPR017877Myb-like domain
SMARTSM0071719628679IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MGGEGAERRS KKEKGKRQEE KAESGSRGDG EAVKLDLATD SLSNSKGKVA MDVEEAKEMP  60
RRKKRKEKEK EKGHGKEKKN KVIADNIEEA CAEAEQAEAS GLKVEQHCSE HVQGDMSKCG  120
SEEDKSIKKD NKLMMKKKKK KERKVEMAEE GQILAGSTDE NAGLLHAEMG RGEKEQGKKS  180
KKSKRKHEDG EPVADGSAGD EIMTNRDKKR RRKEQSVELK EGDQVNISKK AVKIKGNKKR  240
KNESDKFNPD LSTDALTGED KVGGDGKNDK RKKKNDTSTR RNEVGRDDKN DKKKKKSKEG  300
NGGRKGEKEK AAQSKDKVRR VSFSDAVEVF SINDGEDEDN GKSAESEVVH GKRFTPEENA  360
TLMEAIMSYI EMKQLGENGL EMIRACSKHP ELKGCWAEIG KSLPHRPLTA IYKRARILLY  420
RSDERKWTPE EYEKIRRHVE KNGTSWISLA QELGKSEIHL KDTWRRIKPK NLKSVPELPE  480
PPPVDDANRP QLLKPPVQHA TTPRRIGLTD QGCRGEAATV QGQRLLSWRA KVVRQSTANE  540
KGWSKLVVVP EASSGCPFPG QWTQDEYQNL FDLVNLDLRV KAHQEYDAGN RKLRDNIAWE  600
AISDKLTTRN HKNCCLKWYY QLASPLVQKG IWADTDDYRL VEALQNVDAV CVEDIDWDNL  660
LDHRSGEVCR QRWNEMVRYL GGHKEKPFIE QVEVLSKRYC PEMVDYREGE A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166RKKRKE
26167RKKRKEK
3135143KKKKKKERK
4207212KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0110900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643784.10.0RNA polymerase I termination factor isoform X2
TrEMBLI1Q1U60.0I1Q1U6_ORYGL; Uncharacterized protein
STRINGORGLA06G0110900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-57MYB_related family protein