PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0095900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 385aa    MW: 42363.7 Da    PI: 6.7097
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0095900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-1094134444
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                         k +rr+++NReAAr+sR RKka+i++Le    +L    ++
  ORGLA06G0095900.1  94 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 134
                        589**************************977777655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-791189IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.58893137IPR004827Basic-leucine zipper domain
PfamPF001701.5E-795135IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-795138No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-895139No hitNo description
PROSITE patternPS00036098113IPR004827Basic-leucine zipper domain
PfamPF141442.1E-31179255IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAPQGMAAA TAADRFCLPR MAAAAAAASQ VENWGDSGVV VSSPFTDDTS TDLDDSADKH  60
HLHALMGGGD GGDDAGEQRG ADSSAVSKER RGDQKMQRRL AQNREAARKS RMRKKAYIQQ  120
LESSRSKLMH LEQELQRARQ QGIFIATGGS GDHGHSIGGN GTLAFDLEYA RWLDEHQRHI  180
NDLRVALNTQ MSDDELRELV DAVMMHYDQV FRLKSFATKS DVFHVLSGMW MSPAERFFMW  240
LGGFRSSELL KVLASHLEPL TDQQLMGICN LQQSSQQAED ALSQGMEALQ QTLGDTLVSA  300
AATVVGGGGG ADNVTNYMGQ MAIAMAKLTT LENFLRQADL LRHQTLQQMH RILTTRQAAR  360
ALLVISDYFS RLRALSSLWL ARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0095900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642107.10.0transcription factor TGAL3-like isoform X1
RefseqXP_025881815.10.0transcription factor TGAL3-like isoform X2
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLI1Q1E60.0I1Q1E6_ORYGL; Uncharacterized protein
STRINGORGLA06G0095900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-122bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]