PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0093700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 142aa MW: 16464.8 Da PI: 11.9002 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.6e-15 | 37 | 85 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+e+d l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l ORGLA06G0093700.1 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhrSRRSPAQCRDRWRDHL 85 7********************************9************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.575 | 30 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-8 | 34 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-8 | 37 | 85 | No hit | No description |
Pfam | PF00249 | 6.1E-14 | 37 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.2E-17 | 37 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-16 | 37 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 50 | 90 | 128 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR 60 VAAQMPRHRS RRSPAQCRDR WRDHLARDVF HRPFTADDDA ELARLCLRLD DGRSSRAVKR 120 RWRELRKSDA FLGKLWRRPL SH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 1e-12 | 29 | 122 | 1 | 103 | MYB21 |
3osf_D | 1e-12 | 29 | 122 | 1 | 103 | MYB21 |
3osg_A | 1e-12 | 29 | 122 | 1 | 103 | MYB21 |
3osg_D | 1e-12 | 29 | 122 | 1 | 103 | MYB21 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | RAVKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0093700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642267.1 | 9e-94 | transcription factor MYB44 | ||||
TrEMBL | I1Q1C4 | 4e-94 | I1Q1C4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0093700.1 | 7e-95 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-14 | myb domain protein r1 |