PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0089700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 171aa MW: 19353.9 Da PI: 11.4716 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 38 | 83 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l ORGLA06G0089700.1 38 AWTPEEDAVLERLAMEHGSRHWRRVAAQMPRRRSPAQCRDRWRDHL 83 7******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.511 | 31 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 35 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.3E-18 | 36 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-15 | 38 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.15E-12 | 38 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 38 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1 | 88 | 144 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.68 | 91 | 142 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 6.1E-5 | 92 | 143 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDMEFSSSSS SSSTTVASSP ASSPPLGRCV LRFRLPPAWT PEEDAVLERL AMEHGSRHWR 60 RVAAQMPRRR SPAQCRDRWR DHLARDVFHR PFTVADDAEL ARLCLRLDDD AGFAAGRRWK 120 DVSRAVYGRS SCAVKRRWRE LRRSDAFLGA LWRPRTTTTA PPANAAITTT C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 3e-15 | 40 | 138 | 15 | 103 | MYB21 |
3osf_D | 3e-15 | 40 | 138 | 15 | 103 | MYB21 |
3osg_A | 3e-15 | 40 | 138 | 15 | 103 | MYB21 |
3osg_D | 3e-15 | 40 | 138 | 15 | 103 | MYB21 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0089700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004651 | 0.0 | AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06. | |||
GenBank | AP005107 | 0.0 | AP005107.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0431E05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642261.1 | 1e-104 | transcription factor MYB44 | ||||
TrEMBL | I1Q184 | 1e-117 | I1Q184_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0089700.1 | 1e-118 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-13 | myb domain protein 73 |