PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0069900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27570.2 Da    PI: 4.9345
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0069900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.61e-251059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rie+   rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl  ++s
  ORGLA06G0069900.1 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS 59
                       8*********************************************9986 PP
2K-box50.11.2e-171101931898
              K-box  18 qqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        q e++k  + +e+L     ++R++ Ge+Le L+++eLqq+e++Le +l+++  +K++ ++++i+elq+k  +l een++Lr ++
  ORGLA06G0069900.1 110 QLEHSKCSSLNEQLAeasLQLRQMRGEELEGLNVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 193
                        556666666666666555899***********************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.104161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-23323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-29374IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
CDDcd002657.52E-321375No hitNo description
PRINTSPR004041.1E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.598109199IPR002487Transcription factor, K-box
PfamPF014865.0E-16115193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS  60
NMNEIIDKYT THSKNLGKTD KQPSIDLNFF LIILLRTYTN SYAYIHLLLQ LEHSKCSSLN  120
EQLAEASLQL RQMRGEELEG LNVEELQQME KNLEAGLQRV LCTKDQQFMQ EISELQRKGI  180
QLAEENMRLR DQMPQVPTAG LAVPDTENVL TEDGQSSESV MTALNSGSSQ DNDDGSDISL  240
KLGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19173173MEF2C
5f28_B1e-19173173MEF2C
5f28_C1e-19173173MEF2C
5f28_D1e-19173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0069900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3452230.0AY345223.2 Oryza sativa (japonica cultivar-group) transcription factor MADS55 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641679.11e-147MADS-box transcription factor 55 isoform X2
SwissprotQ69TG51e-180MAD55_ORYSJ; MADS-box transcription factor 55
TrEMBLI1Q0N61e-179I1Q0N6_ORYGL; Uncharacterized protein
STRINGORGLA06G0069900.11e-180(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]