PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0062600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 26565.7 Da PI: 7.3825 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H ORGLA06G0062600.1 64 FECHYCRRNFPTSQALGGHQNAH 86 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.71E-6 | 61 | 92 | No hit | No description |
Pfam | PF13912 | 4.7E-6 | 63 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.323 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAAPHGMHGV AAAAPDATIR LFGRDVVSND DAVVVVVDGQ LPKEEAEEEA GGGAAAAAGE 60 TRRFECHYCR RNFPTSQALG GHQNAHKRER QHARRAHLEA SLAAAHYLGP SSHLVYGGAA 120 LFGYGGHAAA VSPQYGRVWA SSAVAPPGLY ATSMGMARPA AYGAGVDVSA LWRASSSSSS 180 SPPMMGSGGG GTFGTVAGGG RHGEAAAAAL VGCRAGKDEN VVMSVVTSLP SLPSWQLPAP 240 EKMGRSELGQ EAGVVSLELR L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0062600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004754 | 0.0 | AP004754.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0529B09. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882184.1 | 0.0 | zinc finger protein 8-like | ||||
TrEMBL | A0A0D3GE01 | 0.0 | A0A0D3GE01_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1Q0G3 | 0.0 | I1Q0G3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0062600.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART06G06690.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP834 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41940.1 | 4e-18 | zinc finger protein 8 |