PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0044400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 321aa    MW: 35191.3 Da    PI: 8.7328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0044400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.7e-13177221347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT+eE+ l+  + + +G g+Wk I++++ ++Rt+ q+ s+ qk+
  ORGLA06G0044400.1 177 IWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQVSSHAQKF 221
                        6******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.372169226IPR017930Myb domain
SuperFamilySSF466897.9E-17172226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-9173220IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-14173224IPR006447Myb domain, plants
SMARTSM007178.1E-9174224IPR001005SANT/Myb domain
CDDcd001673.45E-8178222No hitNo description
PfamPF002491.2E-9178220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGSIVIEGWT ASEIEEARSL ITSPNNGGEG GDGEGNKQKH CGHIVMELHE WFPWKTIGQV  60
IGLYMKLNAG KPMVMHSLNK SDANNSIGEV DHVSALANGN PVRLEEHRPM LNNVGLVFDY  120
PLEEMEMENQ TDKEPKMVVE EEVQPKEGLV IKEKEAGVSK IHTNSQHVTP SIKRRVIWTE  180
EEHRLFMVGL RVFGRGDWKN ISKHLVTTRT AAQVSSHAQK FFLKMEARGE AVPPPAKRRR  240
RRITGDQQAA AAEHAAALRR RMPVPPPPFN PFLLPSLVAP VMHRLLPPGS QAAGAAASGS  300
GGQGASLPQM PWINGANGMG C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241KRRRRR
2236242KRRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0044400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.10.0uncharacterized protein LOC107281238
TrEMBLI1PZY10.0I1PZY1_ORYGL; Uncharacterized protein
STRINGORGLA06G0044400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-18Homeodomain-like transcriptional regulator