PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0019800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 42026.9 Da PI: 7.0686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 8.8e-53 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+d ORGLA06G0019800.1 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQErcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 101 69****************************.9***************953444443456********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s +++ +g++ktLvfykgrap+g+k+dW+mheyrl ORGLA06G0019800.1 102 KAIYS-SSNRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 *****.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-57 | 7 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.858 | 11 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-28 | 12 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-57 | 177 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQERC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSSSNR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPSSASASVS VNLPSYYSSS SSSSSPMHGV AGDQGAQEEG 180 WVICRVFKKK NLVHHGGGAA AASHHAAAKL AAAAMEGSPS NCSTVTVSDH VKAQMLHSSA 240 SDDALDHILQ YMGRSGCKQE TKPAAMSASS AAAAAALEQH LSTPQYGKFM KLPPLEHVAG 300 GVGLLAAAGG GGEYCSAADA SGIADWDTLD RLAASYELNG ALSDVASGKN MAGFFDVVDQ 360 PAGAAAFSSG DGDLWSLARS VSSSLHADLT TMNNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-48 | 8 | 191 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-48 | 8 | 191 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-48 | 8 | 191 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-48 | 8 | 191 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 8 | 191 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-48 | 8 | 191 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-48 | 8 | 191 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0019800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833124 | 0.0 | CT833124.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA241M20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643041.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-107 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0E0PT13 | 0.0 | A0A0E0PT13_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y8W5 | 0.0 | A2Y8W5_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PZ86 | 0.0 | I1PZ86_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q9SNM6 | 0.0 | Q9SNM6_ORYSJ; Os06g0131700 protein | ||||
STRING | ORUFI06G01950.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0131700-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA06G0019800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 2e-90 | NAC family protein |