PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0019800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 395aa    MW: 42026.9 Da    PI: 7.0686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0019800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.8e-53111391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+d
  ORGLA06G0019800.1  11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQErcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 101
                        69****************************.9***************953444443456********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++s +++ +g++ktLvfykgrap+g+k+dW+mheyrl
  ORGLA06G0019800.1 102 KAIYS-SSNRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                        *****.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-577149IPR003441NAC domain
PROSITE profilePS5100555.85811189IPR003441NAC domain
PfamPF023656.5E-2812139IPR003441NAC domain
SuperFamilySSF1019414.18E-57177189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQERC  60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSSSNR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DPSSASASVS VNLPSYYSSS SSSSSPMHGV AGDQGAQEEG  180
WVICRVFKKK NLVHHGGGAA AASHHAAAKL AAAAMEGSPS NCSTVTVSDH VKAQMLHSSA  240
SDDALDHILQ YMGRSGCKQE TKPAAMSASS AAAAAALEQH LSTPQYGKFM KLPPLEHVAG  300
GVGLLAAAGG GGEYCSAADA SGIADWDTLD RLAASYELNG ALSDVASGKN MAGFFDVVDQ  360
PAGAAAFSSG DGDLWSLARS VSSSLHADLT TMNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-48819114167NO APICAL MERISTEM PROTEIN
1ut4_B9e-48819114167NO APICAL MERISTEM PROTEIN
1ut7_A9e-48819114167NO APICAL MERISTEM PROTEIN
1ut7_B9e-48819114167NO APICAL MERISTEM PROTEIN
3swm_A1e-47819117170NAC domain-containing protein 19
3swm_B1e-47819117170NAC domain-containing protein 19
3swm_C1e-47819117170NAC domain-containing protein 19
3swm_D1e-47819117170NAC domain-containing protein 19
3swp_A1e-47819117170NAC domain-containing protein 19
3swp_B1e-47819117170NAC domain-containing protein 19
3swp_C1e-47819117170NAC domain-containing protein 19
3swp_D1e-47819117170NAC domain-containing protein 19
4dul_A9e-48819114167NAC domain-containing protein 19
4dul_B9e-48819114167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0019800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8331240.0CT833124.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA241M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643041.10.0NAC domain-containing protein 43
SwissprotQ84WP61e-107NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A0E0PT130.0A0A0E0PT13_ORYRU; Uncharacterized protein
TrEMBLA2Y8W50.0A2Y8W5_ORYSI; Uncharacterized protein
TrEMBLI1PZ860.0I1PZ86_ORYGL; Uncharacterized protein
TrEMBLQ9SNM60.0Q9SNM6_ORYSJ; Os06g0131700 protein
STRINGORUFI06G01950.10.0(Oryza rufipogon)
STRINGOS06T0131700-010.0(Oryza sativa)
STRINGORGLA06G0019800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.12e-90NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]