PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0198900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 687aa    MW: 74514.9 Da    PI: 6.7348
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0198900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.7e-24133234199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +   s++l+  d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   +
  ORGLA05G0198900.1 133 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--R 221
                        99****************************864443.4569************************************************..3 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         ++++l+++v+r+
  ORGLA05G0198900.1 222 GDDGQLRLGVRRA 234
                        4888899999986 PP
2Auxin_resp106.14.1e-35259339182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRf++ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L
  ORGLA05G0198900.1 259 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 339
                        578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.15E-42122271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38128236IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-22131233No hitNo description
PfamPF023621.2E-21133234IPR003340B3 DNA binding domain
SMARTSM010195.3E-23133235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887133235IPR003340B3 DNA binding domain
PfamPF065072.0E-27260339IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALXXXXX XXXXXXXXXX XXXXXXXXVP  60
PAGAAAVPPH VACRVVGVEL RADAATDEVY ARLALVAEGE MLQRNFREGG GEDGAGEMEG  120
CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKTVRPS QELIAVDLHG  180
TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG VRRAVQLRNE  240
ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL KSLNHPFSIG  300
MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS HQNRVSPWEI  360
ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR VLQGQEFRGS  420
RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI GFSESLGFPE  480
VLQGQEMSQV VPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH PISQFTLSSS  540
KVSSPSSVLM FNQATAPNHE TVGGTNNKGM HVSQFASQEM LSETVTWPGT QRQTPSEITS  600
NQFALARIPA PPSGAESGLP KRDAGRSSCR LFGFSLTGNM LGEDGEGLDD GAIEAGCENP  660
PVLELFGHSH STPGALHALC AAAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A9e-851936118353Auxin response factor 1
4ldy_B9e-851936118353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0198900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679270.0AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637659.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLI1PX910.0I1PX91_ORYGL; Auxin response factor
STRINGORGLA05G0198900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-130ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]