PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0187700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 639aa    MW: 69717.5 Da    PI: 9.387
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0187700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06116136425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        + C f+a+ G Ck G +C+F H
  ORGLA05G0187700.1 116 RTCTFYAQ-GRCKNGKSCTFLH 136
                        78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-5111137IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043112138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6112137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605112139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
AGLPAAGEAA KAGRVGVGTT KRARDPSPNS KDPNGFVGVI AAEKKPALQL HGDEKYQKKA  60
GNDPVPPTID DTSKTGGLHL HGGHVSQSPP DSNALSLQRF GSSSPGGDMK NKTRKRTCTF  120
YAQGRCKNGK SCTFLHEGEV SGSDNQVYGN HGDTGEGSEI QHPSSSKERQ FKNSAGSSQH  180
EIYRTLVHAY GEDNRGLTHP VVKHSCHMLK ASHGFKIGGS LTANPTNEVV QLPVVQEKNH  240
EPYFMGHQIS LGTNNCLNDM GAYSRLRLDG GKLQFEVAKG DSPRDSHLSR SYLEKNPLKP  300
YYRYQPFDST ISLDPHQYSK KLSAYGGATE NLPHKHQEEK SSSHVSHSLN SYTGFRKQGH  360
DSSDFFLVNQ SLRATSHHGT LPLHQLTPDK DASHHKGADF DKGGTSRSTL LVSSSSQPVV  420
ASAGKLSPIK DEVWITSVPF VPSFNFPDFP GSTSPSKSQY DPLVDSIDPP KVESLNNLKT  480
SNISCSISSQ HVDTNVIRGG SLEKPLTFAD KLARNVSAKG SNDFGLISYD RGHSSSLDGD  540
NRVKTCERKN DASLNNEKSD FRFHLVEHVK ELVKPIWKEG NLSKEAHKLI VKKSVDKIFA  600
SLEPNQMPET EKAITTYITA SAPKIEKLVK AYVDRHRTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0187700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLI1PWX90.0I1PWX9_ORYGL; Uncharacterized protein
STRINGORGLA05G0187700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-14C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]