PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0185300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 289aa MW: 32186 Da PI: 4.9678 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.6 | 1.6e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s +++++ + +++dfl d+v + ORGLA05G0185300.1 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTVSSSHLKQCIHSYNVYDFLRDVVSK 86 5789**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.0E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.65E-20 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YDITVQRGVK 60 TVSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR 120 NEAASQTSTG RGRGRGRGRG RRGGRVSERE IIFSYEKFEN HEFPPGQFIK PSQLKVDVSV 180 DGTDAIETKE ATPLSNARAS LRNIDLNIEL TDYDDEGSAP LEVQPPAPAA GVVTISSGPL 240 VSEVNEEAKT KDFLGWQLPE LTKMAMDPVQ FALSSNHRLE EDEDYDNEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-22 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 139 | RGRGRGRGRG |
2 | 130 | 140 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0185300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288048 | 0.0 | AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds. | |||
GenBank | AK068320 | 0.0 | AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639312.1 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | A0A0D3G9B7 | 0.0 | A0A0D3G9B7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PWV5 | 0.0 | I1PWV5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0185300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G21370.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-55 | nuclear factor Y, subunit C11 |