PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0178700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 279aa    MW: 31564.3 Da    PI: 8.0649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0178700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18139226196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++++s+v++  +l lp +f++ h  + +++ +++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l + ++f  
  ORGLA05G0178700.1 139 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF-- 222
                        89*********************8885.3.36679***************..555444..***********************9876777.. PP

                        EEEE CS
                 B3  93 vvkv 96 
                        ++ +
  ORGLA05G0178700.1 223 KIYI 226
                        5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-21131228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-24132228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.45E-27137228No hitNo description
SMARTSM010192.5E-23139230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464139230IPR003340B3 DNA binding domain
PfamPF023623.6E-17139227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TLASPKPRKK  60
FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR  120
AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG  180
EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA  240
DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0178700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639491.10.0B3 domain-containing protein Os05g0481400 isoform X2
SwissprotQ5KQI40.0Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0D3G9160.0A0A0D3G916_9ORYZ; Uncharacterized protein
TrEMBLI1PWN90.0I1PWN9_ORYGL; Uncharacterized protein
STRINGORGLA05G0178700.10.0(Oryza glaberrima)
STRINGOBART05G20480.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]