PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0177400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 34222.1 Da PI: 4.6333 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.6 | 4.5e-22 | 119 | 185 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STT..EEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpk..vveitYegeHnhe 59 +dD++ WrKYGqKe+k+s++pr YYrC+++ gC+++k+v++s++ d+ v +itY geH+++ ORGLA05G0177400.1 119 MDDKFLWRKYGQKEIKNSKYPRFYYRCSYKddhGCTATKQVQQSETaddDTAspVYVITYFGEHTCR 185 58***************************99999*******9986421133233789*******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 17.029 | 114 | 164 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.2E-23 | 115 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-21 | 116 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-32 | 119 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-23 | 120 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MALTMLSLAA IAGKPTTASA QLVAEGRESA ARLYALLVGS SALHGPLDLA EQILLCFDRA 60 LAKLHGVDVA GAENDDAAGS GNVRKRKPGR GSAAAASSKR MRVSNGGGNG ARIERKATMD 120 DKFLWRKYGQ KEIKNSKYPR FYYRCSYKDD HGCTATKQVQ QSETADDDTA SPVYVITYFG 180 EHTCRHGHDA AAMVADGGEE DQLSPAQMVI SFASSGGGGD ASVSWPCSGD DAQNNSETSH 240 ESSPPEAPAG EEEHLRPCTA AADVPDEPIM ESTPPAPELL ADLKLMDGCL LDGESLFGMD 300 ELVYFHELSA ALGLLDRDWG APV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-20 | 119 | 185 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0177400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144737 | 0.0 | AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639266.1 | 0.0 | probable WRKY transcription factor 38 | ||||
TrEMBL | I1PWM6 | 0.0 | I1PWM6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0177400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4663 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 7e-22 | WRKY DNA-binding protein 38 |