PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0154400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 370aa    MW: 37458.6 Da    PI: 4.9708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0154400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-20169218255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  ORGLA05G0154400.1 169 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 218
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-37169232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-33169227IPR001471AP2/ERF domain
PROSITE profilePS5103225.686169226IPR001471AP2/ERF domain
PfamPF008471.2E-13169218IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22169227IPR016177DNA-binding domain
PRINTSPR003671.2E-11170181IPR001471AP2/ERF domain
CDDcd000182.96E-14177228No hitNo description
PRINTSPR003671.2E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MADQRRRFRG GGDWQASVDD VVDDGGELEA AAAAAAAAAA RGSVLSGEYQ AQEMSTMVSA  60
LTWVVAAGHD DHGGGQWSGL VDVPATTLAG GGGGGGDYGH GAQGSYYYYG AAPTSTPEFV  120
AGGQQEQLSS DVPQGGASLG LAMDEHSPTY TVEASSSADQ HGGGGGGRRY RGVRQRPWGK  180
WAAEIRDPHK AARVWLGTFE TAEAAARAYD EAALRFRGSR AKLNFPEDAR LSSPPAGAGA  240
GGATAAAQPV PVAYPASAVS DYLQYQMLLH GGGGGGGGRY PLYYGGGAAA AMSSSLGPYS  300
SIPTSSVTVA SVPSSSSAAS SSSGYGAPAE HGEAVQWTSW PDGGGWTYPA TTSSWSGSSQ  360
YPPPPRPPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24167226363ATERF1
3gcc_A9e-24167226363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0154400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053180.0AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.21e-170ethylene-responsive transcription factor ABR1
TrEMBLI1PVZ60.0I1PVZ6_ORYGL; Uncharacterized protein
STRINGORGLA05G0154400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-16ethylene response factor 110