PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA05G0099400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 326aa MW: 34011.8 Da PI: 5.6059 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74 | 1.9e-23 | 117 | 178 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqKe+++s++p++Y+rCt++ C+++++v+r+++dp +tY geH+++ ORGLA05G0099400.1 117 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQVQRCDDDPASYRVTYIGEHTCR 178 58***************************98878*************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-25 | 104 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.61 | 112 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-23 | 115 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-34 | 117 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-22 | 118 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MTSSMSPAPA PAYAQVMEDM EKGKELAAQL QGLLRDSPEA GRFVDQILHT FSRAMRALDK 60 AAVSAAGGEG SEVQSEVTCG GGASAGGKRK APAADRKANC RRRTQQSSGN TVVVKNLDDG 120 QAWRKYGQKE IQNSKHPKAY FRCTHKYDQL CTAQRQVQRC DDDPASYRVT YIGEHTCRDP 180 ATAPIIAAHV IHQVAAGDDD DGCGGLHAGS RLISFVAAPA APVDAAAAPT TSTITTVTAP 240 GPLLQPLKVE GGVGSSDQEE VLSSLTPGSS AARGGGGGGG VAGPFGPDQG DVTSSLHWSY 300 DAVAGMEFFK NDEVVFDLDD IMGLSF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-47 | 110 | 178 | 1 | 69 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00408 | DAP | Transfer from AT3G56400 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA05G0099400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK066255 | 0.0 | AK066255.1 Oryza sativa Japonica Group cDNA clone:J013058O04, full insert sequence. | |||
GenBank | AK103959 | 0.0 | AK103959.1 Oryza sativa Japonica Group cDNA clone:001-015-C02, full insert sequence. | |||
GenBank | AY870611 | 0.0 | AY870611.1 Oryza sativa (japonica cultivar-group) WRKY45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637594.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | I1PUE6 | 0.0 | I1PUE6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0099400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7656 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56400.1 | 6e-26 | WRKY DNA-binding protein 70 |