PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0055500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 402aa    MW: 42648.8 Da    PI: 7.1665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0055500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08122142526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G Ck+Gd C FaHg
  ORGLA05G0055500.1 122 ACPDFRK-GGCKRGDACEFAHG 142
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5122144IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7122142IPR000571Zinc finger, CCCH-type
SMARTSM0035612152175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258152176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMMMGEGAHA PPWQQHVASP VSGVEGGGGK ESEVVAAPYH LLDALRHYLP SNEAAAAEDE  60
EEAAAVAAAV DAYACDEFRM YEFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRRYCYSG  120
TACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV  180
LPPSQQQGSN SPRGCGGGGA GAAASPLAES YDGSPLRRQA FESYLTKSIM SSSPTSTLVS  240
PPRSPPSESP PLSPDAAGAL RRGAWAGVGS PVNDVLVSLR QLRLGSPRSA PSCASFLPAG  300
YQYGSPKSPA AAAAAALYSL PSTPTRPSPV TVTTASGTTV TVEPLDLGLI EEEQPMERVE  360
SGRALREKVF ERLSKEATVS TDAAAAAAGV APDVGWVSDL IN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0055500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324860.0AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLI1PT570.0I1PT57_ORYGL; Uncharacterized protein
STRINGORGLA05G0055500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-77C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]