PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0278200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 24239.7 Da PI: 9.7424 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.9 | 6.6e-22 | 21 | 112 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdk 90 lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp +++ e yfF+ +++ +g +ra g W+a+gk+k ORGLA04G0278200.1 21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLAHLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEK 108 699***************************.99***************...346778999998887776258888886443899*******9 PP NAM 91 evls 94 v++ ORGLA04G0278200.1 109 LVVA 112 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-28 | 15 | 112 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.221 | 21 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-11 | 22 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAAEAASGGG GGYRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAH 60 LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-13 | 18 | 114 | 12 | 108 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0278200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067450 | 0.0 | AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence. | |||
GenBank | AK068446 | 0.0 | AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence. | |||
GenBank | AK288942 | 0.0 | AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence. | |||
GenBank | CT829591 | 0.0 | CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence. | |||
GenBank | CT829592 | 0.0 | CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence. | |||
GenBank | CU406744 | 0.0 | CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence. | |||
GenBank | GU120351 | 0.0 | GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627804.1 | 8e-75 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A0D3EY32 | 1e-74 | A0A0D3EY32_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G42420.1 | 2e-75 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-19 | NAC domain containing protein 83 |