PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0270600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 288aa    MW: 32221.1 Da    PI: 6.37
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0270600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.86.4e-4791432128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatg 87 
                        +pGfrFhPt+eelv +yL++kv g++ +   +i+evd++++ePwdL + ++++++   +yfFs +d+ky+    tg+r+nrat++g+Wkatg
  ORGLA04G0270600.1   9 APGFRFHPTEEELVGYYLARKVVGQPDDG--IIQEVDLNSIEPWDLLQ-AQQHDEeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATG 97 
                        79************************766..8**************74.4444441356**********98888899*************** PP

                NAM  88 kdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                        +dk+vls+  +        +g++ktLvfy+grap+g ktdW++heyrl
  ORGLA04G0270600.1  98 RDKPVLSSsrS--SsspavIGMRKTLVFYRGRAPNGCKTDWIIHEYRL 143
                        *******8551..245556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-505163IPR003441NAC domain
PROSITE profilePS5100551.1778163IPR003441NAC domain
PfamPF023655.8E-2510143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEEEWCCVAP GFRFHPTEEE LVGYYLARKV VGQPDDGIIQ EVDLNSIEPW DLLQAQQHDE  60
EYYCYFFSYK DRKYPSARGT GTRTNRATAA GFWKATGRDK PVLSSSRSSS SPAVIGMRKT  120
LVFYRGRAPN GCKTDWIIHE YRLVAHHQQP DGSCWVVCRA FHKPTTTTLQ HQLHLHRPPP  180
LLHHHGYYDD QYLYPPPAAA GGGGLLCSPA LDMELEDEED ESKMMILSND NIPLVVSPTA  240
VHTQGTGGDI INDATTAPAA AAADHRRHPE LLAAGPIDTL LHHHHFTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-38816315168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0270600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323420.0AL732342.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635310.11e-161NAC domain-containing protein 105
SwissprotQ9FH592e-59NC105_ARATH; NAC domain-containing protein 105
TrEMBLI1PR870.0I1PR87_ORYGL; Uncharacterized protein
STRINGORGLA04G0270600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1902799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.12e-48NAC domain containing protein 76
Publications ? help Back to Top
  1. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]