PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0270000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 523aa MW: 56688.9 Da PI: 5.5725 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 9.7e-25 | 123 | 227 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+lt+sd+++ g +++p+ +a+++ + ++ +s lt+ d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+ g ORGLA04G0270000.1 123 AKQLTQSDANNGGGFSVPRLCADHIfpalnldDDPPVQS--LTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCG 212 69*******************9777*****976676675..************************************************886 PP S..SEE..EEEEE-S CS B3 87 r..sefelvvkvfrk 99 e++l+v+v+r+ ORGLA04G0270000.1 213 ApaPERKLLVGVRRA 227 557999999999986 PP | |||||||
2 | Auxin_resp | 45.5 | 3.2e-16 | 250 | 325 | 1 | 74 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrW 74 a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++ Gm+++ + +e ed ++ + Gt + +++ + r ORGLA04G0270000.1 250 AVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQvMEAEDTRRLAWlNGTLTNLRHQQIWRT 325 5778999***************************************9758***************99988666444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-26 | 111 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-31 | 114 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.16E-18 | 120 | 226 | No hit | No description |
SMART | SM01019 | 1.4E-15 | 122 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 122 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-21 | 123 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-12 | 250 | 330 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP 60 DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APAPAPAAAE LAEAESQEFR 120 YYAKQLTQSD ANNGGGFSVP RLCADHIFPA LNLDDDPPVQ SLTMGDLQGD SWEFRHIYRG 180 TPRRHLLTTG WSKFVNAKQL VAGDTVVFMW CGAPAPERKL LVGVRRAARY SGESACNARG 240 RVQPQEVMEA VRLAAEQAAF RVTYYPRHGA GEFVVPRVEV DKGLTTPWRC GMQVRAQVME 300 AEDTRRLAWL NGTLTNLRHQ QIWRTLEVEW DASAASSSMK NRFVNPWQVQ PVDFPPLPMG 360 LKISNNNISA PVCNGDSLLV PPILMHPQPQ PPADIQGARH NNGHAYADIP SSSTPSMVRT 420 QQLFPRDLQI LVPHTDIVTP QNGSPPDNPV NTPLSASDGM KTIQLFGVTI TSPVQGDTNG 480 AFASAQVNQV PEGVDDEPAT EEASDTSLPD SLTNGHNQDG ARL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 5e-54 | 24 | 353 | 21 | 356 | Auxin response factor 1 |
4ldy_B | 5e-54 | 24 | 353 | 21 | 356 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0270000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109449 | 0.0 | AK109449.1 Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634416.1 | 0.0 | auxin response factor 13 | ||||
Swissprot | Q7XSS9 | 0.0 | ARFM_ORYSJ; Auxin response factor 13 | ||||
TrEMBL | I1PR81 | 0.0 | I1PR81_ORYGL; Auxin response factor | ||||
STRING | ORGLA04G0270000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11355 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-75 | auxin response factor 17 |
Publications ? help Back to Top | |||
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