PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0240800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 498aa MW: 53988.7 Da PI: 6.1983 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.1 | 2.8e-15 | 143 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g ORGLA04G0240800.1 143 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 202 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 52.2 | 1.5e-16 | 245 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt+eeAa+a++ a+ k++g ORGLA04G0240800.1 245 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 296 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.56E-21 | 143 | 212 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-17 | 143 | 211 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-12 | 143 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-16 | 144 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.322 | 144 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-29 | 144 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 145 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.24E-24 | 245 | 305 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 245 | 305 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-11 | 245 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 246 | 304 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 246 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-32 | 246 | 310 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 286 | 306 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MDMDTSHHYP WLNFSLAHHC EMEEEERGAA AELAAIAGAA PPPKLEDFLG GGCNGGSSGG 60 ACPPVQTTAP TAAELYESEL KFLAAGFQLS GAAGAAPPVP ALLPAAALEQ TDETKQLALP 120 PQAAVAPPPE QKKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQVYL 180 GGYDKEEKAA RAYDLAALKY WGPSTTTNFP VAEYEKELEE MKHMTRQEFV ASLRRKSSGF 240 SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTE EEAAEAYDIA AIKFRGLNAV 300 TNFEIGRYNV ESIISSNLPI GSMAGNRSTK AGLELAPSSS ADAIAATEAN HTGVAPPSTL 360 AFTALPMKYD QADYLSYLAL QHHQQGNLQG LGFGLYSSGV NLDFANANGN GTMSNCYTNV 420 SLHEQQQHQH QHQHQHQQEQ QQDQQDDQSQ SSNNSCGSIP FATPIAFSGS YESSMTAAGT 480 FGYYPNVAAF QTPIFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0240800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111891 | 0.0 | AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633701.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-137 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | I1PQD9 | 0.0 | I1PQD9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0240800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-124 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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