PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0203800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 414aa    MW: 43649.2 Da    PI: 4.7451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0203800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31163221259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  ORGLA04G0203800.1 163 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 221
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109157223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-31160223IPR003657WRKY domain
SuperFamilySSF1182902.62E-26160223IPR003657WRKY domain
SMARTSM007741.4E-37162222IPR003657WRKY domain
PfamPF031068.5E-26164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGGDLTD IVRAGGGAMP GSVVVDLPST AAEWQLPAEP MLFPPPPSLS  60
STTDGCGAGG AAGADIFGGG GGDLFSGLVD PFSSDYSSGA DFLDAMPDAM AKVGFDTAAV  120
AGMQMSSPRS GGIKRRKNQA RKVVCIPAPT AAGGRPSGEV VPSDLWAWRK YGQKPIKGSP  180
YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSHHSKN  240
SGGGGGSGSK GSQNDKSQQQ PSVKEEQKDQ ATTATTTTTS TITTTNSASP VVVKEEEAAL  300
AGSSEALELE RVMDTTAAGV VDHSELMDHV FSENYKPMIP ETGQPDDFFA DLAELESDPM  360
SLIFSKEYME AKPSGGDHAQ EKAMAKELDP FDMLDWSTTT NSSAGSSFEQ GKRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25137224280Disease resistance protein RRS1
5w3x_D7e-25137224280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0203800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634477.10.0probable WRKY transcription factor 4
SwissprotQ9SA802e-71WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLI1PPB90.0I1PPB9_ORYGL; Uncharacterized protein
STRINGORGLA04G0203800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-67WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]