PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0197900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28794.5 Da    PI: 8.9752
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0197900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.6e-321463150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  ORGLA04G0197900.1 14 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 63
                       79**********************************************95 PP
2K-box972.9e-3284178599
              K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        s+++l+  +++s++qe+++Lk ++e Lqr+qRh+lGed ++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++
  ORGLA04G0197900.1  84 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDHGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKN 175
                        334488899*********************************************************************************** PP

              K-box  97 kle 99 
                        kle
  ORGLA04G0197900.1 176 KLE 178
                        *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571666IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-32781IPR002100Transcription factor, MADS-box
CDDcd002651.10E-43782No hitNo description
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-33828IPR002100Transcription factor, MADS-box
PfamPF003193.1E-271562IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-332843IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-334364IPR002100Transcription factor, MADS-box
PfamPF014865.7E-3092177IPR002487Transcription factor, K-box
PROSITE profilePS5129717.07993183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
VDRSEMGRGR VELKRIENKI NRQVTFSKRR NGLLKKAYEL SVLCDAEVAL IIFSSRGKLY  60
EFGSAGINKT LEKYNSCCYN AQGSNSALAG GEHQSWYQEM SRLKTKLECL QRSQRHMLGE  120
DHGPLSIKEL QQLEKQLEYS LSQARQRKTQ IMMEQVDDLR RKERQLGELN KQLKNKLEAE  180
ADSSNCRSAI QDSWVHGTVV SGGRVLNAQP PPDIDCEPTL QIGYYQFVRP EAANPRSNGG  240
GGDQNNNFVM GWPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22674169MEF2C
5f28_B2e-22674169MEF2C
5f28_C2e-22674169MEF2C
5f28_D2e-22674169MEF2C
6byy_A2e-22675170MEF2 CHIMERA
6byy_B2e-22675170MEF2 CHIMERA
6byy_C2e-22675170MEF2 CHIMERA
6byy_D2e-22675170MEF2 CHIMERA
6bz1_A3e-22675170MEF2 CHIMERA
6bz1_B3e-22675170MEF2 CHIMERA
6bz1_C3e-22675170MEF2 CHIMERA
6bz1_D3e-22675170MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0197900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1091530.0AF109153.1 Oryza sativa MADS box transcription factor MADS17 (MADS17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634419.10.0MADS-box transcription factor 17-like
SwissprotQ7XUN20.0MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLI1PP600.0I1PP60_ORYGL; Uncharacterized protein
STRINGORGLA04G0197900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.18e-91AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]