PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0129600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 282aa    MW: 31023.4 Da    PI: 4.0391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0129600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.54.1e-13131551128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWk 84 
                        lp G+rF+P+d +++ +yL + + +      +  +v++ vd++ + P  +p     +v ++++ + yfF  + +     + + r +  g W 
  ORGLA04G0129600.1  13 LPWGYRFRPSDRQIIANYLGPMAIHGAdslPQRGDVVEGVDVFATRPAAIPFeprrHVFGRDEvRAYFFGDQPTD----S-RGREVPGGAWL 99 
                        689****************99976665475455578**************9546653333344377999887554....3.4577899**** PP

                NAM  85 atgkdkevlsk...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                          g   + +s    +ge+v  ++   f           ++a ++ + +W m+eyrl
  ORGLA04G0129600.1 100 PCGGGDKAYSGgadGGEAVAYRRKYEFRaaneeadraGEEAATPARPRWRMKEYRL 155
                        999988888877778888*********97776665532467777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-224184IPR003441NAC domain
PROSITE profilePS5100522.98113185IPR003441NAC domain
PfamPF023656.2E-1014155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASSAHMAAV LNLPWGYRFR PSDRQIIANY LGPMAIHGAD SLPQRGDVVE GVDVFATRPA  60
AIPFEPRRHV FGRDEVRAYF FGDQPTDSRG REVPGGAWLP CGGGDKAYSG GADGGEAVAY  120
RRKYEFRAAN EEADRAGEEA ATPARPRWRM KEYRLNKSAA AFRRAYAQPN PKANMDCVVR  180
EIYTKAVPPP TPPSGRSGDE EMQEGSDYSV MDEDELVDYL LQGFEDGNFD EDQDQPAAAE  240
DGDYSDEDED QPAAAEDGDY SDEDQDQPAA AEDGDYSDED EP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0129600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.10.0NAC domain-containing protein 67-like
TrEMBLI1PM770.0I1PM77_ORYGL; Uncharacterized protein
STRINGORGLA04G0129600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.13e-10NAC domain containing protein 95