PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0122400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 331aa    MW: 36360.4 Da    PI: 10.1762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0122400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-05106123320
                        ETTTTEEESSHHHHHHHH CS
            zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                        C  Cg++F+ +++L rH 
  ORGLA04G0122400.1 106 CRVCGRRFRARDTLLRHF 123
                        *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.177104132IPR007087Zinc finger, C2H2
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFPPFSHLRR RLLAAIPNPN LLFQPSRSLS TSTTPATRAP ATPVAVLWDL AASRPPSTLP  60
LYDAAVRLHL AATSFGRVRL SAAFVHPGHR LPAPSPSAAA AAVHLCRVCG RRFRARDTLL  120
RHFDAIHARE HAKRLARIDS SRGDRRVRLA AALSLKLSKY EKAARELTAA ADPCSPADDL  180
RRARVAVELS PTPSVSLLER AHEVLDGGSV RCLMLVSARD ELAPLLRLAR EKGVRSVVVG  240
GESGPARWAD VGFSWAEVIA GKARKAAPSV SGKWRDRDVL KRLEWRYDDD DEEVVFEEDG  300
DEDGIDELTR NSKGKPWWKL ESDGEDSSAC R
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0122400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066530.0AL606653.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence.
GenBankAL6630170.0AL663017.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636930.10.0uncharacterized protein LOC4336084
TrEMBLI1PM050.0I1PM05_ORYGL; Uncharacterized protein
STRINGORGLA04G0122400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-38C2H2 family protein