PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0107700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 691aa MW: 77857.4 Da PI: 7.2999

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0107700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.6	1.3e-15	65	165	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.........dgkwevtk 80 Y+ +A++ GFs+r+++++ + + t+r fvC + g++ + + ++ +r+r ++r+gCka +++ ++ +g+w+vt ORGLA04G0107700.1 65 LYSGFARRRGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGNPPAKPFAagaGDRPQRNRRSSRCGCKAYMRIGRSAiaaaaageaEGEWRVTG 156 79**********9998877355667999******9999888777788899**********9875333333445689** PP FAR1 81 leleHnHel 89 ++++HnHel ORGLA04G0107700.1 157 FSNHHNHEL 165 ******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-13	65	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-18	288	379	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	566	602	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-7	572	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-4	577	604	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MMPAGSASLL LECYGGDPPL SSMEGTSSGE EVEDGTGPSP EAEEDDDPAP YVGQRFPTHD 60 AAHELYSGFA RRRGFSIRRH RTEGKDGVGR GLTRRYFVCH RAGNPPAKPF AAGAGDRPQR 120 NRRSSRCGCK AYMRIGRSAI AAAAAGEAEG EWRVTGFSNH HNHELLGQDQ VRLLPAYRVV 180 SGDDRDRILM LARSGISVQQ MMRIMELERR VEPGNLPFTE KDVRNLIQSC RKSDQEESVD 240 LIKMCRRFQE KDPDFKYEFT KGASNRVENV AWSFASSVQS YEMFGDAVVF DTTHRLPALD 300 MLLGIWVGLN NHGMPCFFGC ALLREESLQS YAWALKVFLN FMNRKAPLTI LTDENMYLKE 360 AIEKELPGTK QALCIWLIAA RFPSWFDAVL GERYNSWKDE FDRLYNMEST MEFDLGWNDM 420 MNSYGLHGNG HIASLFASRT LWALPYLRGQ FFAGLLASPE TSKSISVFIQ RFSSAQTRLA 480 HFIEQVAVVA EYKDQAGRQQ MMQHNLQSIT LKTATPMERH AAAVLTPYAF SKLQDELVVA 540 CQYASFHLEG NVFLVRHHTK TEDGGCNVTW SQREELISCS CNMFESAGIL CRHALRVLST 600 LNYFQIPDHY LPPRWRRTWP SPSKALNGAY FDESPEIGRV KALQSMVSAL VSEASKSTER 660 MDIATREVSA LLSRMRQQPV VMHVSGDGVH K

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MMPAGSASLL LECYGGDPPL SSMEGTSSGE EVEDGTGPSP EAEEDDDPAP YVGQRFPTHD  60
AAHELYSGFA RRRGFSIRRH RTEGKDGVGR GLTRRYFVCH RAGNPPAKPF AAGAGDRPQR  120
NRRSSRCGCK AYMRIGRSAI AAAAAGEAEG EWRVTGFSNH HNHELLGQDQ VRLLPAYRVV  180
SGDDRDRILM LARSGISVQQ MMRIMELERR VEPGNLPFTE KDVRNLIQSC RKSDQEESVD  240
LIKMCRRFQE KDPDFKYEFT KGASNRVENV AWSFASSVQS YEMFGDAVVF DTTHRLPALD  300
MLLGIWVGLN NHGMPCFFGC ALLREESLQS YAWALKVFLN FMNRKAPLTI LTDENMYLKE  360
AIEKELPGTK QALCIWLIAA RFPSWFDAVL GERYNSWKDE FDRLYNMEST MEFDLGWNDM  420
MNSYGLHGNG HIASLFASRT LWALPYLRGQ FFAGLLASPE TSKSISVFIQ RFSSAQTRLA  480
HFIEQVAVVA EYKDQAGRQQ MMQHNLQSIT LKTATPMERH AAAVLTPYAF SKLQDELVVA  540
CQYASFHLEG NVFLVRHHTK TEDGGCNVTW SQREELISCS CNMFESAGIL CRHALRVLST  600
LNYFQIPDHY LPPRWRRTWP SPSKALNGAY FDESPEIGRV KALQSMVSAL VSEASKSTER  660
MDIATREVSA LLSRMRQQPV VMHVSGDGVH K

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0107700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100533	0.0	AK100533.1 Oryza sativa Japonica Group cDNA clone:J023101L24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636061.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	I1PLK8	0.0	I1PLK8_ORYGL; Uncharacterized protein
STRING	ORGLA04G0107700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]