PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0413100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 279aa    MW: 30205.8 Da    PI: 5.858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0413100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY825.9e-26105165158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++++Y g+H++
  ORGLA03G0413100.1 105 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 165
                        58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2792167IPR003657WRKY domain
SuperFamilySSF1182901.05E-2499167IPR003657WRKY domain
PROSITE profilePS5081121.264100163IPR003657WRKY domain
SMARTSM007741.3E-39105167IPR003657WRKY domain
PfamPF031064.7E-25106165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVELCGGEGE GQIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS  60
CFPPPEHPPP AAGNAGRDAA FKKRKGMAKV RRQVRVTSVQ DTASLDDGLS WRKYGQKDIL  120
GAKYPRAYFR CTHRHTQGCN ATKQVQRADG DPLLFDVVYL GDHTCGQAAV AAVAQRAPPE  180
HAGQEQQRQS SLLAAGTEGI HQQVVAEPME AAAPFLFTST AAGGVDDGYF SFISPANSDC  240
QFSSDFSAGS VGVDMDHEAR FEDLFSNTLE FFQSEIHNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22104165768OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0413100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083890.0AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.10.0probable WRKY transcription factor 41
TrEMBLI1PY440.0I1PY44_ORYGL; Uncharacterized protein
STRINGORGLA03G0413100.10.0(Oryza glaberrima)
STRINGORGLA05G0229200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-33WRKY family protein