PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0402000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 469aa    MW: 51794.4 Da    PI: 9.1288
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0402000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19370467397
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++
  ORGLA03G0402000.1 370 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SES 459
                        89************************888999********7778*******9989999999**99.9*******************43.388 PP

                        E..EEEEE CS
                 B3  90 felvvkvf 97 
                        ++++v ++
  ORGLA03G0402000.1 460 GKFYVALC 467
                        88888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-24367465IPR015300DNA-binding pseudobarrel domain
CDDcd100178.82E-23367467No hitNo description
SuperFamilySSF1019367.59E-19367464IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-7368465IPR003340B3 DNA binding domain
PROSITE profilePS508639.982368469IPR003340B3 DNA binding domain
PfamPF023622.3E-15370467IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP  60
AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN  120
NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNGFYQNL TFNSWTSNNM PRNPVYTSFH  180
PAAIEDHHAP LFHSNNHDID PEFLGNRHLH GVDIAGAPPA KATSPATAGG LLTNTAPATM  240
SQIHARCRRR QIYRCCGLLP RAPPPSDPCA FARAAITAAG SARGLLSHLY GGLVFWLVGK  300
RKLGEKRERK RKVVAGMDPP IVFRRSDMES EKNDDNPDQI PVSEPPSMNQ NGENLIIRFN  360
CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY  420
RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESG KFYVALCLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-353594664110B3 domain-containing transcription factor LEC2
6j9c_D2e-353594664110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0402000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066680.0AL606668.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.11e-120putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC41e-121Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLI1PI240.0I1PI24_ORYGL; Uncharacterized protein
STRINGORGLA03G0402000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2156545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.17e-35B3 family protein