PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0354300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 35248.9 Da PI: 7.1466 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v ORGLA03G0354300.1 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV 107 79****************************.88***************8777899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl ORGLA03G0354300.1 108 AP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142 99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-64 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.377 | 17 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-27 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGMGMRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKFDPW 60 DLPERALFGA REWYFFTPRD RKYPNGSRPN RAAGNGYWKA TGADKPVAPR GRTLGIKKAL 120 VFYAGKAPRG VKTDWIMHEY RLADAGRAAA GAKKGSLRLD DWVLCRLYNK KNEWEKMQQG 180 KEVKEEASDM VTSQSHSHTH SWGETRTPES EIVDNDPFPE LDSFPAFQPA PPPATAMMVP 240 KKESMDDATA AAAAAAATIP RNNSSLFVDL SYDDIQGMYS GLDMLPPGDD FYSSLFASPR 300 VKGTTPRAGA GMGMVPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-127 | 3 | 176 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0354300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067690 | 0.0 | AK067690.1 Oryza sativa Japonica Group cDNA clone:J013120D02, full insert sequence. | |||
GenBank | AK099245 | 0.0 | AK099245.1 Oryza sativa Japonica Group cDNA clone:J013116P10, full insert sequence. | |||
GenBank | AK104551 | 0.0 | AK104551.1 Oryza sativa Japonica Group cDNA clone:006-305-E06, full insert sequence. | |||
GenBank | AK104712 | 0.0 | AK104712.1 Oryza sativa Japonica Group cDNA clone:001-037-H04, full insert sequence. | |||
GenBank | AY596808 | 0.0 | AY596808.1 Oryza sativa (japonica cultivar-group) NAC transcription factor (NAC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650786.1 | 0.0 | PREDICTED: NAC domain-containing protein 67-like | ||||
Swissprot | Q75HE5 | 0.0 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0D3FQL1 | 0.0 | A0A0D3FQL1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZEX0 | 0.0 | A0A0D9ZEX0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PGP7 | 0.0 | I1PGP7_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM03G38490.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORGLA03G0354300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G38670.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-80 | NAC family protein |
Publications ? help Back to Top | |||
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