PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0344800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 265aa    MW: 28007.8 Da    PI: 7.079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0344800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11146193455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  ORGLA03G0344800.1 146 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 193
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-18140209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10140197No hitNo description
Gene3DG3DSA:4.10.280.102.0E-18142210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPAPTLAAE LWRTPHLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE  60
APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSSGD NSSLRTEAET DSRNASKSGD  120
QNLPPPEPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAS  180
VLDEIINYIQ ALQRQVEFLS MKLEAVNAHV NNGIEAFPPK DFGAQVYNTA PGLTFDPQTP  240
REYAQGSTPS EWLHMQIGGT YERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0344800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.10.0transcription factor BHLH089-like
SwissprotQ84T080.0BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0D3FQB90.0A0A0D3FQB9_9ORYZ; Uncharacterized protein
TrEMBLI1PGF20.0I1PGF2_ORYGL; Uncharacterized protein
STRINGORGLA03G0344800.10.0(Oryza glaberrima)
STRINGOBART03G37850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-72BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]