PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA03G0340500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 147aa MW: 16347.8 Da PI: 5.2555 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.7e-06 | 2 | 41 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+ri +++ L+el+P+ K + a++L + +Y+k L ORGLA03G0340500.1 2 QLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 41 56******************7.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.493 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-4 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-11 | 3 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-11 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-6 | 4 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MQLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF LRLQVKVLSM SRLGGAGAVA 60 QLVADIPLSV KGEASDSGGN QQIWEKWSTD GTERQVAKLM EEDIGAAMQF LQSKALCMMP 120 ISLAMAIYDT QQTQDGQPVK HEPNTPS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA03G0340500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK068388 | 0.0 | AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence. | |||
GenBank | AK104412 | 0.0 | AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650733.2 | 1e-102 | PREDICTED: transcription factor UNE12-like isoform X1 | ||||
Refseq | XP_015633087.1 | 1e-102 | transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 3e-60 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | I1PGA9 | 1e-104 | I1PGA9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0340500.1 | 1e-105 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02590.3 | 3e-54 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|