PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0318300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 23287.4 Da PI: 10.1702 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 3.9e-33 | 37 | 94 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ ORGLA03G0318300.1 37 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 94 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-34 | 21 | 95 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-29 | 28 | 95 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 31 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 36 | 95 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 37 | 94 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
RKCAPAAAAT ATAKKGQKRA RQPRFAFMTK SEIDHLEDGY RWRKYGQKAV KNSPFPRSYY 60 RCTNSKCTVK KRVERSSDDP SVVITTYEGQ HCHHTASFQR GVGGAAVAAH IHGAAAVALA 120 EQMSAFVSPP PQPHMLYGLP RLHPPSSETA VSCSMPTTTS LQELNNGEGL QRPGYNNSPQ 180 AAVTIAQRPP SPSVPPAVSF DKGLLDDIVP PGVRLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 26 | 93 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 26 | 93 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0318300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341859 | 0.0 | AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631421.1 | 1e-155 | probable WRKY transcription factor 57 | ||||
Refseq | XP_015631422.1 | 1e-155 | probable WRKY transcription factor 57 | ||||
TrEMBL | I1PFN7 | 1e-159 | I1PFN7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0318300.1 | 1e-160 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-53 | WRKY DNA-binding protein 57 |