PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0304100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 298aa    MW: 31952.5 Da    PI: 11.2128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0304100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08131175554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  ORGLA03G0304100.1 131 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 175
                        889**********************8.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-13125196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-7125176No hitNo description
PROSITE profilePS5088812.106126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5131175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-4132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
ANGVVLRRVP RRRGRVLLPP PRAGVAGAAV RPHCVAGAGA GAGAGGGGGE AERVPGVRRR  60
GARRSAGGGG GCHHRWDEHP PEGDGRAGQD GRRRRRGGEG GGXGDGGGGG GAAAAAARAG  120
RRRGEQPRFR HMMRERQRRE KLSQSYADLY AMVSSRSKGD KNSIVQSAAI YIHELKVARD  180
QLQRRNEELK AQIMGHDEQQ PCVTVQFEVD EPSSSIDSMI AALRRLKGMS VKARGIRSSM  240
SGNRLWTEMN VETTIAACEV EKAVEEALKE VERNQPDSDA PFPGSKGWTQ TSHVQNVF
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0304100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717340.0AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631231.11e-121transcription factor BHLH148
SwissprotQ75KV91e-122BH148_ORYSJ; Transcription factor BHLH148
TrEMBLI1PF950.0I1PF95_ORYGL; Uncharacterized protein
STRINGORGLA03G0304100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-12bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]