PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0244900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 306aa    MW: 34841.7 Da    PI: 10.3051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0244900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.5e-22421201398
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        s+  ++p++f+ ++ggk   +k ++le++sg +++v++  +k+sgr+vl++GW ++v+a++Lk gDf+vFk++g+s+   +  +f+
  ORGLA03G0244900.1  42 SH-KTIPNEFLHNFGGK--IPKSIKLETRSGLTFDVQV--TKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQL--KTLIFD 120
                        44.69******877888..6778***************..********************************998777..777766 PP
2B343.65.4e-142243051599
                        -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  ORGLA03G0244900.1 224 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 305
                        566778888666431....2225555.55*********996655554555.********************99887888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.40829122IPR003340B3 DNA binding domain
SMARTSM010190.001435122IPR003340B3 DNA binding domain
PfamPF023624.3E-2042120IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-2042124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-1645120No hitNo description
Gene3DG3DSA:2.40.330.105.1E-2046132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-22201305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20202305IPR015300DNA-binding pseudobarrel domain
CDDcd100174.30E-16207304No hitNo description
PROSITE profilePS5086311.984210306IPR003340B3 DNA binding domain
SMARTSM010190.001211306IPR003340B3 DNA binding domain
PfamPF023622.4E-12225305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVKILKTTLR ATTMLKVLVK IRLSLFLIFS VLXLMLIMYM ASHKTIPNEF LHNFGGKIPK  60
SIKLETRSGL TFDVQVTKNS GRVVLQSGWA SYVSAHDLKI GDFLVFKYSG DSQLKTLIFD  120
SSGCEKVCEK PVDMSGRSYD IAMRNSQDEK KKRKQRDISR QGTVKPSEEG LKAELVPGCI  180
LPSRTDLTRL QKNILTEKVK AINSETPIYG YVMNNSSIHG IPCTVEISKK YADVYLPFED  240
GTVVLQHHGK SWNVRCCLTK QNSKRFLKGW RQFAGDNKLH LGDICLFDLL KDKKKYVMDV  300
HIIRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0244900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V10.0Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLI1PDK30.0I1PDK3_ORYGL; Uncharacterized protein
STRINGORGLA03G0244900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-16B3 family protein