PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0244700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 1028aa MW: 117819 Da PI: 10.0375 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65 | 1.1e-20 | 149 | 238 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f ORGLA03G0244700.1 149 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--EKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF-- 231 56666..445555.6********888655..4459***************..**************************************.. PP EEEEE-S CS B3 93 vvkvfrk 99 vk+f+ ORGLA03G0244700.1 232 EVKIFDP 238 9999986 PP | |||||||
2 | B3 | 37.8 | 3.3e-12 | 337 | 410 | 1 | 77 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L++g ORGLA03G0244700.1 337 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVG 410 77889999999999999**********76555....3455.667*********77666666.89**************99 PP | |||||||
3 | B3 | 66 | 5.6e-21 | 460 | 541 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le +sg +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ ORGLA03G0244700.1 460 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 541 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
4 | B3 | 57.2 | 3e-18 | 734 | 820 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+ + ORGLA03G0244700.1 734 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--K 816 5555..44444.57********555666..66789999999********..********************************986555..7 PP EEEE CS B3 94 vkvf 97 v +f ORGLA03G0244700.1 817 VLIF 820 7777 PP | |||||||
5 | B3 | 47.3 | 3.6e-15 | 944 | 1027 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k ORGLA03G0244700.1 944 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 1027 56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-24 | 143 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-25 | 143 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.689 | 146 | 239 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.38E-20 | 148 | 237 | No hit | No description |
Pfam | PF02362 | 9.9E-19 | 149 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-13 | 149 | 239 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-25 | 325 | 410 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-16 | 330 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-14 | 335 | 410 | No hit | No description |
Pfam | PF02362 | 1.0E-10 | 337 | 411 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0018 | 337 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.306 | 338 | 429 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-25 | 444 | 555 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-23 | 446 | 544 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.915 | 449 | 542 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.77E-20 | 450 | 540 | No hit | No description |
Pfam | PF02362 | 1.5E-18 | 452 | 540 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-11 | 452 | 542 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-5 | 630 | 696 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-22 | 726 | 825 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.704 | 730 | 823 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.93E-21 | 733 | 820 | No hit | No description |
Pfam | PF02362 | 4.6E-16 | 733 | 820 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-12 | 733 | 823 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-21 | 743 | 831 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 926 | 1025 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-18 | 927 | 1025 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 933 | 1028 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.54E-13 | 935 | 1026 | No hit | No description |
SMART | SM01019 | 5.6E-8 | 936 | 1028 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 943 | 1027 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1028 aa Download sequence Send to blast |
TAPFPASPVR LHPCPLLFSH PHLLGSDYFA FSVKGRGAHL ESMRVENKRG NRSWGTDAKR 60 THPNSIFNQL VRYGYIGTGF PDMNCSLTWS LTGGPSTLSL PSFFPSAHLL LLLALFFLCI 120 QSNHRMSKSG CERCRGRGFW DTDDQDTYFF KVMIGGFRRQ MTIPYKFAEN FRDQIQGTIK 180 LKARNGNTCS VLVEKCSNKL VLTKGWAEFA NSHDIKMGDF LVFRYTGNSQ FEVKIFDPSG 240 CVKAASHNAV NIGQHAQNMQ GDPIEILSCS DEHLRAQSLT TERQNQPEKD VIDNCNKKMK 300 TEHASSSEDD QETPTAEVHR MKVEEMVRAI HSNHPVFVAV MKKSNVTRQP CYVAISRKYA 360 NEYFPGGDQM LTLQRHGKRW QVKFCISKRK LRMLSKGWRK FTRDNELQVG APLALFITLF 420 FSPHFRKMKK CGQKMRKLNT RSTARDDQEK YFFKVMIGDF HKRMTIPDKF ARHFKGVISK 480 TIKLEPRSGY TFDVQVTKKL NILVLGSGWE SFVNAHDLNM GDFLVFKYNG DFLLQVLIFD 540 PSGCEKSTSC SMENAIDHVG QGWKEHNDIS TSYHDQPKGN KHWMQKDSSS KGNKIGNTRS 600 SNTPSKFSGC ILPRGTCLPV VQEKKMKEKI QAIHSKTPMY GNVMTKCNVS GSPCVLEITQ 660 LYDDAYLPFN NGQELMLRHR DKSWKVRFYR FKNKSRKLTQ ASSLYKMRRP GARCREGHAH 720 FNGNHIDGQY KNFFKVMIGR FRERMIIPNE FLQYFRGKIP RTIKLQLRDG CTYDVQVTKN 780 LGKISLQSGW KAFVTAHDLQ MGDFLVFSYD GISKLKVLIF GPSGCEKVHS RPTLKNATHC 840 GEKWEEPLHI SSNSHDLPVK SPQNVSKSEK QWDSSEQEND TANIEEVALQ GDDLQGHPVL 900 NCILPKHTRL TDMQKQQLES KVGAIHSEIP IYGCILRKSR VHGKSQTVDI CREYADVYLP 960 FKELNMTLQR HGKNWEVLCR TKDTRTKRLS TGWSRFAQEN NLQVGDICLF ELLKKKEYSM 1020 NVHIIPKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0244700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 0.0 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880058.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | I1PDK1 | 0.0 | I1PDK1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0244700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-23 | B3 family protein |