PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0244100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 563aa    MW: 63989.3 Da    PI: 9.1897
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0244100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.6e-1933117598
                        -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f  +v +
  ORGLA03G0244100.1  33 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIENSRF--TVLI 115
                        4..5556655.***********999..888****************..*********************************99999..8887 PP

                        E- CS
                 B3  97 fr 98 
                        ++
  ORGLA03G0244100.1 116 LD 117
                        76 PP
2B3469.6e-15250348399
                        EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
                 B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                        +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f
  ORGLA03G0244100.1 250 TTMKHSNVNSHhASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDICIFHLKnFNgRKF 339
                        678888888886789*******8887..557789999985778*******77888888*************************986666888 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                        + +v+++r+
  ORGLA03G0244100.1 340 RATVHLLRE 348
                        888888875 PP
3B356.74.4e-18466559899
                        -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
                 B3   8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93 
                        s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  ORGLA03G0244100.1 466 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMT 553
                        55555522345899******93.33344.5555554999*******..777776689***********************996644556677 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v+++r+
  ORGLA03G0244100.1 554 VHIIRH 559
                        777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-2124121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2225125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.77426119IPR003340B3 DNA binding domain
CDDcd100178.01E-1827117No hitNo description
SMARTSM010192.7E-1029119IPR003340B3 DNA binding domain
PfamPF023622.6E-1733117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-18239336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20243344IPR015300DNA-binding pseudobarrel domain
CDDcd100179.03E-20246337No hitNo description
SMARTSM010190.0016248349IPR003340B3 DNA binding domain
PfamPF023625.9E-14249348IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293249349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-22451560IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-20452560IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-14457558No hitNo description
PROSITE profilePS5086312.844459560IPR003340B3 DNA binding domain
SMARTSM010199.5E-11459560IPR003340B3 DNA binding domain
PfamPF023622.2E-16463559IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE  60
LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIENSR FTVLILDSNG  120
CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTAQSSGG ERFARSESGS DSQHSKTAKL  180
AATCSSGGSG EEAKESSSSE HESSYDLVDP QIAPMPGYVL SRGTNLSEAH EEKLDMLVQE  240
IRPEIPLYVT TMKHSNVNSH HASLVIAKHY ACAYFPRTSQ TITLKWHGKN RKWHPKFYIR  300
KDQVGYILHG RWIDFVRHNH VKEGDICIFH LKNFNGRKFR ATVHLLRETI PHSFGALHIP  360
KRFESRNGRM RLKMTDDRRV SSTECRRGTM EPSTTNVKKE ADNEQCNNGQ GKRQEPLNFD  420
VSVGSSKPYL TADRVSLTEE QFRKVEENVH SIQSEGPIYV SIMNKSNVGT DGLYIITLGR  480
QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSGDARMFT LGWRDFVRDN RLQTEDICLF  540
QLMKNSERGL AMTVHIIRHS ERS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0244100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLI1PDJ50.0I1PDJ5_ORYGL; Uncharacterized protein
STRINGORGLA03G0244100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]