PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0243900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 519aa MW: 59128 Da PI: 8.7358 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 35 | 116 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ + +++p+kf++++gg s+t+ l +++g ++ vk+ + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f v ++ ORGLA03G0243900.1 35 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 116 334.456********888877..899****************..*********************************99999..66665 PP | |||||||
2 | B3 | 62.7 | 6e-20 | 248 | 347 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+ ++++s+v+++ ++lv+pk++a++h + es+t+tl+ ++++W + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+ + ORGLA03G0243900.1 248 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgG 337 6677888888887788***********6..446779999985666****99977999999*************************8744456 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ef +v+++r ORGLA03G0243900.1 338 EFGATVHLLR 347 6666777666 PP | |||||||
3 | B3 | 59.2 | 7.2e-19 | 423 | 515 | 8 | 99 |
-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 s+v++ ++++ ++fa+++ +++ e++ l++ +++ W+vk+ r +sg ++t+GW++Fv++n+L+ D+++F+l+++ s+ +++v+ ORGLA03G0243900.1 423 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDeSKLTMTVH 511 555555112346689***999.3444455566777899*******..77777779**************************998******** PP EE-S CS B3 96 vfrk 99 ++r+ ORGLA03G0243900.1 512 IIRR 515 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-20 | 25 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.125 | 26 | 119 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-19 | 26 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-15 | 27 | 117 | No hit | No description |
SMART | SM01019 | 9.9E-8 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-15 | 34 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-21 | 240 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-24 | 242 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.91E-22 | 246 | 347 | No hit | No description |
SMART | SM01019 | 1.2E-7 | 248 | 350 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-20 | 248 | 348 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.197 | 249 | 349 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-22 | 408 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-19 | 409 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.67E-15 | 414 | 514 | No hit | No description |
PROSITE profile | PS50863 | 11.801 | 416 | 516 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-6 | 416 | 516 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-19 | 420 | 516 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE 60 LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG 120 CEKVFTWAGI KKTSSVQERN VAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL 180 AETSSSGESG EEGTDSSTSE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD 240 IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR 300 KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS 360 HKRFDLRDGR TWPKVTGARR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM 420 NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW 480 RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0243900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102169 | 0.0 | AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628609.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X1 | ||||
Swissprot | Q851W5 | 0.0 | Y3204_ORYSJ; B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | I1PDJ3 | 0.0 | I1PDJ3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0243900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-12 | B3 family protein |
Publications ? help Back to Top | |||
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